QSIRecon: Reconstruction of preprocessed q-space images (dMRI)
Full documentation at https://qsirecon.readthedocs.io
About
QSIRecon builds post-processing workflows that produce many of the biologically-interesting dMRI derivatives used for hypothesis testing. The main goal of QSIRecon is to make the state-of-the-art methods available in Dipy, MRTrix, DSI Studio, PyAFQ and other software packages easy to apply on preprocessed dMRI data. QSIRecon is companion software for XCP-D, doing for dMRI what XCP-D does for BOLD.
QSIRecon workflows can produce outputs such as
ODF/FOD reconstruction
Model fits and parameter estimation
Tractography
Tractometry
Regional connectivity
Tabular data
Citing QSIRecon
If you use QSIRecon in your research, please use the boilerplate generated by the workflow. The main citation is
Cieslak, M., Cook, P. A., He, X., Yeh, F. C., Dhollander, T., Adebimpe, A., … & Satterthwaite, T. D. (2021). QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data. Nature methods, 18(7), 775-778.