qsirecon.workflows.recon.amico module

AMICO Reconstruction workflows

qsirecon.workflows.recon.amico.init_amico_noddi_fit_wf(inputs_dict, name='amico_noddi_recon', qsirecon_suffix='', params={})

Reconstruct EAPs, ODFs, using 3dSHORE (brainsuite-style basis set).

Inputs

qsirecon outputs

Outputs

directions_image

Image of directions

icvf_image

Voxelwise ICVF.

od_image

Voxelwise Orientation Dispersion

isovf_image

Voxelwise ISOVF

modulated_icvf_image

Voxelwise modulated ICVF (ICVF * (1 - ISOVF))

modulated_od_image

Voxelwise modulated Orientation Dispersion (OD * (1 - ISOVF))

rmse_image

Voxelwise root mean square error between predicted and measured signal

nrmse_image

Voxelwise normalized root mean square error between predicted and measured signal

config_file

Pickle file with model configurations in it

fibgz

qsirecon.workflows.recon.amico.init_amico_noddi_fit_wf(inputs_dict, name='amico_noddi_recon', qsirecon_suffix='', params={})

Reconstruct EAPs, ODFs, using 3dSHORE (brainsuite-style basis set).

Inputs

qsirecon outputs

Outputs

directions_image

Image of directions

icvf_image

Voxelwise ICVF.

od_image

Voxelwise Orientation Dispersion

isovf_image

Voxelwise ISOVF

modulated_icvf_image

Voxelwise modulated ICVF (ICVF * (1 - ISOVF))

modulated_od_image

Voxelwise modulated Orientation Dispersion (OD * (1 - ISOVF))

rmse_image

Voxelwise root mean square error between predicted and measured signal

nrmse_image

Voxelwise normalized root mean square error between predicted and measured signal

config_file

Pickle file with model configurations in it

fibgz