qsirecon.workflows.recon package

Reconstruction pipeline nodes

Miscellaneous workflows

qsirecon.workflows.recon.utils.init_discard_repeated_samples_wf(inputs_dict, name='discard_repeats', qsirecon_suffix='', params={})

Remove a sample if a similar direction/gradient has already been sampled.

qsirecon.workflows.recon.utils.init_conform_dwi_wf(inputs_dict, name='conform_dwi', qsirecon_suffix='', params={})

If data were preprocessed elsewhere, ensure the gradients and images conform to LPS+ before running other parts of the pipeline.

Submodules

• qsirecon.workflows.recon.amico module
• qsirecon.workflows.recon.anatomical module
• qsirecon.workflows.recon.build_workflow module
• qsirecon.workflows.recon.converters module
• qsirecon.workflows.recon.dipy module
• qsirecon.workflows.recon.dsi_studio module
• qsirecon.workflows.recon.mrtrix module
• qsirecon.workflows.recon.pyafq module
• qsirecon.workflows.recon.scalar_mapping module
• qsirecon.workflows.recon.steinhardt module
• qsirecon.workflows.recon.tortoise module
• qsirecon.workflows.recon.utils module