qsirecon.workflows.recon.scalar_mapping module
Summarize and Transform recon outputs
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_bundle_wf(inputs_dict, name='scalar_to_bundle', qsirecon_suffix='', params={})[source]
Map scalar images to bundles
- Inputs
- tck_files
MRtrix3 format tck files for each bundle
- bundle_names
Names that describe which bundles are present in tck_files
- recon_scalars
List of dictionaries containing scalar info
Outputs
- bundle_summaries
summary statistics in tsv format
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_atlas_wf(inputs_dict, name='scalar_to_template', qsirecon_suffix='', params={})[source]
Map scalar images to atlas regions
- Inputs
- tck_files
MRtrix3 format tck files for each bundle
- bundle_names
Names that describe which bundles are present in tck_files
- recon_scalars
List of dictionaries containing scalar info
- Outputs
- bundle_summaries
summary statistics in tsv format
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_template_wf(inputs_dict, name='scalar_to_template', qsirecon_suffix='', params={})[source]
Maps scalar data to a volumetric template
- Inputs
- recon_scalars
List of dictionaries containing scalar info
Outputs
- template_scalars
List of transformed files
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_atlas_wf(inputs_dict, name='scalar_to_template', qsirecon_suffix='', params={})[source]
Map scalar images to atlas regions
- Inputs
- tck_files
MRtrix3 format tck files for each bundle
- bundle_names
Names that describe which bundles are present in tck_files
- recon_scalars
List of dictionaries containing scalar info
- Outputs
- bundle_summaries
summary statistics in tsv format
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_bundle_wf(inputs_dict, name='scalar_to_bundle', qsirecon_suffix='', params={})[source]
Map scalar images to bundles
- Inputs
- tck_files
MRtrix3 format tck files for each bundle
- bundle_names
Names that describe which bundles are present in tck_files
- recon_scalars
List of dictionaries containing scalar info
Outputs
- bundle_summaries
summary statistics in tsv format
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_surface_wf(inputs_dict, name='scalar_to_surface', qsirecon_suffix='', params={})[source]
Maps scalar data to a surface.
- qsirecon.workflows.recon.scalar_mapping.init_scalar_to_template_wf(inputs_dict, name='scalar_to_template', qsirecon_suffix='', params={})[source]
Maps scalar data to a volumetric template
- Inputs
- recon_scalars
List of dictionaries containing scalar info
Outputs
- template_scalars
List of transformed files